Google Scholar: >6820 citations (July 2022)

Pettie N, Llopart A, Comeron JM  2022. Meiotic, genomic and evolutionary properties of crossover distribution in Drosophila yakuba. PLoS Genetics 18 (3), e1010087

Kockler ZW, Comeron JM, Malkova A. 2021. A unified alternative telomere-lengthening pathway in yeast survivor cells. Molecular Cell 81 (8), 1816-1829.e5

Llopart A, Brud E, Pettie N, Comeron JM 2018. Support for the Dominance Theory in Drosophila Transcriptomes. Genetics 10 (2), 703-71018.

Comeron JM. 2017. Background selection as null hypothesis in population genomics: Insights and challenges from Drosophila studies. Philos Trans R Soc Lond B Biol Sci.372(1736).  PubMed

Adrian AB, Cruz Cochado J, Comeron JM. 2016. Predictive models of recombination rate variation across the Drosophila melanogaster genome. Genome Biol. Evol 8(8):2597-612. PubMed Google Scholar

Comeron JM, Reed J, Christie M, Jacobs JS, Dierdorff J, Eberl DF, Manak JR. 2016. A Mismatch EndoNuclease Array-Based Methodology (MENA) for Identifying Known SNPs or Novel Point Mutations.  Microarrays 5(2), 7. PubMed Google Scholar

Comeron JM. 2014. Background selection as baseline for nucleotide variation across the Drosophila genome. PLoS Genetics 10(6): e1004434.PubMed Google Scholar   

Adrian AB, Comeron JM. 2013. The Drosophila early ovarian transcriptome provides insight to the molecular causes of recombination rate variation across genomes. BMC Genomics 14: 794 PubMed Google Scholar

Comeron JM, Ratnappan R, Bailin S. 2012. The many landscapes of recombination in Drosophila melanogaster. PLoS Genetics 8(10):e1002905. PubMed Google Scholar

Perspective:  Singh N. 2012. Classical Genetics Meets Next-Generation Sequencing: Uncovering a Genome-Wide Recombination Map in Drosophila melanogaster. PLoS Genetics 8(10): e1003024

Research Highlight: New layers to recombination patterns. Nature Reviews Genetics 2012: 13(12) doi:10.1038/nrg3368

Faculty of 1000 Recommendation. Presgraves D and Brand C. 20 Nov 2012. F1000 Prime Genomics & Genetics.

McDonnell CM, King D, Comeron JM, Li H, Sun W, Berenbaum MR, Schuler MA, Pittendrigh BR. 2012. Evolutionary toxicogenomics: diversification of thecyp12d1 and cyp12d3 genes in Drosophila species. J Mol Evol. 74(5-6):281-96. PubMed Google Scholar

Hong X, Doddapaneni H, Comeron JM, Rodesch MJ, Halvensleben HA, Nien CY, Bolei F, Metpally R, Richmond TA, Albert TJ et al.. 2012. Microarray-based capture of novel expressed cell type-specific transfrags (CoNECT) to annotate tissue-specific transcription in Drosophila melanogaster. G3 (Bethesda). 2(8):873-82. PubMed Google Scholar

Williford A, Comeron JM. 2010. Local effects of limited recombination: historical perspective and consequences for population estimates of adaptive evolution. J Hered. 101 Suppl 1:S127-34. PubMed Google Scholar

Wu M, Comeron JM, Yoon H S, Bhattacharya D. 2009. Unexpected dynamic gene family evolution in algal actins. Mol Biol Evol. 26(2):249-53. PubMed Google Scholar

Lanier W, Moustafa A, Bhattacharya D, Comeron JM. 2008. EST analysis of Ostreococcus lucimarinus, the most compact eukaryotic genome, shows an excess of introns in highly expressed genes. PLoS One. 3(5):e2171. PubMed Google Scholar

Comeron JM, Williford A, Kliman RM. 2008. The Hill-Robertson effect: evolutionary consequences of weak selection and linkage in finite populations. Heredity (Edinb). 100(1):19-31. PubMed Google Scholar

Llopart A, Mabillé A, Peters-Hall JR, Comeron JM, Kliman RM. 2008. A new test for selection applied to codon usage in Drosophila simulans and D. mauritiana. J Mol Evol. 66(3):224-31. PubMed Google Scholar

Llopart A, Comeron JM. 2008. Recurrent events of positive selection in independent Drosophila lineages at the spermatogenesis gene roughex. Genetics. 179(2):1009-20. PubMed Google Scholar

Hadany L, Comeron JM. 2008. Why are sex and recombination so common? Ann N Y Acad Sci. 1133:26-43. PubMed Google Scholar

Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al.. 2007. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450(7167):203-18. PubMed Google Scholar 

Comeron JM. 2007. Evolution of noncoding DNA in eukaryotes. Genetics and Genomics. Ed. R.A. Meyers. Vol.1, Ch 10:325-336.

Yoon H S, Ciniglia C, Wu M, Comeron JM, Pinto G, Pollio A, Bhattacharya D. 2006. Establishment of endolithic populations of extremophilic Cyanidiales (Rhodophyta). BMC Evol Biol. 6:78. PubMed Google Scholar

Comeron JM. 2006. Weak selection and recent mutational changes influence polymorphic synonymous mutations in humans. Proc Natl Acad Sci U S A. 103(18):6940-5. PubMed Google Scholar

Kalari KR, Casavant M, Bair TB, Keen HL, Comeron JM, Casavant TL, Scheetz TE. 2006. First exons and introns--a survey of GC content and gene structure in the human genome. In Silico Biol. 6(3):237-42. PubMed Google Scholar

Comeron JM, Guthrie TB. 2005. Intragenic Hill-Robertson interference influences selection intensity on synonymous mutations in Drosophila. Mol Biol Evol. 22(12):2519-30. PubMed Google Scholar

Comeron JM. 2005. Repetitive sequence and noncoding DNA evolution eukaryotes. Encyclopedia Mol. Cell. Biol. and Mol. Med. Edited R.A. Meyers (2nd Ed.) Vol.12:127-137

Qin H, Wu W B, Comeron JM, Kreitman M, Li W-H. 2004. Intragenic spatial patterns of codon usage bias in prokaryotic and eukaryotic genomes. Genetics. 168(4):2245-60. PubMed Google Scholar

Comeron JM. 2004. Selective and mutational patterns associated with gene expression in humans: influences on synonymous composition and intron presence. Genetics. 167(3):1293-304. PubMed Google Scholar

Haring SJ, Lautner LJ, Comeron JM, Malone RE. 2004. A test of the CoHR motif associated with meiotic double-strand breaks in Saccharomyces cerevisiae. EMBO Rep. 5(1):41-6. PubMed Google Scholar

Comeron JM, Kreitman M, De La Vega FM. 2003. On the power to detect SNP/phenotype association in candidate quantitative trait loci genomic regions: a simulation study. Pac Symp Biocomput. :478-89. PubMed Google Scholar

Duan J, Wainwright MS, Comeron JM, Saitou N, Sanders AR, Gelernter J, Gejman PV. 2003. Synonymous mutations in the human dopamine receptor D2 (DRD2) affect mRNA stability and synthesis of the receptor. Hum Mol Genet. 12(3):205-16. PubMed Google Scholar

Llopart A, Comeron JM, Brunet FG, Lachaise D, Long M. 2002. Intron presence-absence polymorphism in Drosophila driven by positive Darwinian selection. Proc Natl Acad Sci U S A. 99(12):8121-6. PubMed Google Scholar

Comeron JM, Kreitman M. 2002. Population, evolutionary and genomic consequences of interference selection. Genetics. 161(1):389-410. PubMed Google Scholar

Sanders AR, Cao Q, Taylor J, Levin TE, Badner JA, Cravchik A, Comeron JM, Naruya S, Del Rosario A, Salvi DA et al.. 2001. Genetic diversity of the human serotonin receptor 1B (HTR1B) gene. Genomics. 72(1):1-14. PubMed Google Scholar

Comeron JM. 2001. What controls the length of noncoding DNA? Curr Opin Genet Dev. 11(6):652-9. PubMed Google Scholar

Comeron JM, Kreitman M. 2000. The correlation between intron length and recombination in Drosophila. Dynamic equilibrium between mutational and selective forces. Genetics. 156(3):1175-90. PubMed Google Scholar

Kreitman M, Comeron JM. 1999. Coding sequence evolution. Curr Opin Genet Dev. 9(6):637-41. PubMed Google Scholar

Comeron JM. 1999. K-Estimator: calculation of the number of nucleotide substitutions per site and the confidence intervals. Bioinformatics. 15(9):763-4. PubMed Google Scholar

Comeron JM, Kreitman M, Aguadé M. 1999. Natural selection on synonymous sites is correlated with gene length and recombination in Drosophila. Genetics. 151(1):239-49. PubMed Google Scholar

Comeron JM, Kreitman M. 1998. The correlation between synonymous and nonsynonymous substitutions in Drosophila: mutation, selection or relaxed constraints? Genetics. 150(2):767-75. PubMed Google Scholar

Comeron JM, Aguadé M. 1998. An evaluation of measures of synonymous codon usage bias. J Mol Evol. 47(3):268-74. PubMed Google Scholar

Zeng LW, Comeron JM, Chen B, Kreitman M. 1998. The molecular clock revisited: the rate of synonymous vs. replacement change in Drosophila. Genetica. 102-103(1-6):369-82. PubMed Google Scholar

Comeron JM, Aguadé M. 1996. Synonymous substitutions in the Xdh gene of Drosophila: heterogeneous distribution along the coding region. Genetics. 144(3):1053-62. PubMed Google Scholar

Comeron JM. 1995. A method for estimating the numbers of synonymous and nonsynonymous substitutions per site. J Mol Evol. 41(6):1152-9. PubMed Google Scholar

Comeron JM. 1994. Program for estimating the number of nucleotide substitutions using different methods. J Heredity. 85(6):493-494

Martí­n-Campos JM, Comeron JM, Miyashita N, Aguadé M. 1992. Intraspecific and interspecific variation at the y-ac-sc region of Drosophila simulans and Drosophila melanogaster. Genetics. 130(4):805-16. PubMed Google Scholar